Basic Local Alignment Search Tool (BLAST) is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. Now that whole genomes are ...


SEPPA(Spatial Epitope Prediction of Protein Antigens) server is presented here as a tool for conformational B-cell epitope prediction. With 3D protein structure as input, each residue in the query protein will be given a score according to its ...


We develop an Integrated Transcription REgulation Platform (ITREP), which presents plentiful information of transcription factors (TFs) and transcription factor binding sites (TFBSs). It is deserve to note that interaction pair message ...


Query interface for microRNA - gene transcriptional network. We offer two query types: Level neighbours and Minimal network. Ouput figure size and Vertex radius could be defined by user.


O-Glycosylation is one of the most important, frequent and complex post-translational modifications. Here, we present three Support Vector Machines models based on 0/1 system, physical-chemical properties and the system ...


Peptide viewer in jmol, developed by Bioinfomatics Center, Shanghai Institutes for Biological Sciences.


We have systematically collected almost all currently available data of 321 S-nitrosylation sites on 221 proteins from Swiss-Prot and published papers, and developed a novel algorithm to predict S-nitrosylation sites. The integrated ...


Due to the noise in MS/MS data , the complexity of PTMs ,all these identification algorithms can not avoid high false positive rate and need further validation. So we design kinds of validation methods ( InspecT-Validate ) based on "InspectT".


Gene silencing using exogenous small interfering RNAs (siRNAs) is now a widespread molecular tool for gene functional study and new-drug target identification...


Meta-Analytic Gene Set enrichment Analysis.Gene expression profiling has become an important tool for biological research, integrative analysis of microarray data is useful for some researches. Typical integrative approach at gene level is ...


FirstGlance in Jmol is the easiest way to look at the 3D structures of proteins, DNA, RNA, and their complexes. It works within a web browser, and was designed to enable the readers of scientific journals to see the main features of newly ...


Incorporating almost all currently available lysine acetylation information, and using the support vector machine (SVM) method along with coding schema for protein sequence coupling patterns, we propose here a novel lysine acetylation prediction ...


Query interface for mRTP2 predicted microRNA - target network. We offer two query types: Level neighbours and Minimal network. Ouput figure size and Vertex radius could be defined by user.


Nucleic Acid Binding Protein Prediction. The submitted sequence must be in FASTA format. The program was developed by Bioinformatics Center and Chinese Academy of Sciences.


"siRNAPre" predicts potensial siRNAs using the SVM and the sequence-based statistical method. Sequence Format: We accepts two types of input format. Only DNA sequences are allowed. Accepted input types are: FASTA and Bare Sequence.


There are eight useful online tools in Utilities 2007, including NaiveMatrixSearching, PEPSIMU62, FunnyFingerSelector, FunnyHmmer, FunnyPAML.yn00, FunnyCluster, ZNFMotifMatrix (α version), DNARetrieve.


Construct in-silico miRNA overexpression/knockdown microarray, and Analyze miRNA overexpression/knockdown microarray data.